Runge Kutta : Step:  For Adaptive step method, an initial step size is required.
Model name:   Population size:   Email:

Rxn Name Compound Reactant/Product Carbon
Glucupt Gluc Reactant A,B,C,D,E,F
Glc6P Product A,B,C,D,E,F
hxi Glc6P Reactant A,B,C,D,E,F
Fru6P Product A,B,C,D,E,F
hxi_reversed Fru6P Reactant A,B,C,D,E,F
Glc6P Product A,B,C,D,E,F
pfk Fru6P Reactant A,B,C,D,E,F
GAP Product C,B,A
GAP Product D,E,F
pfk_reversed GAP Reactant C,B,A
GAP Reactant D,E,F
Fru6P Product A,B,C,D,E,F
eno GAP Reactant A,B,C
PEP Product A,B,C
pyk PEP Reactant A,B,C
Pyr Product A,B,C
pyk_reversed Pyr Reactant A,B,C
PEP Product A,B,C
gdh Glc6P Reactant A,B,C,D,E,F
CO2 Product A
Rul5P Product B,C,D,E,F
rpe Rul5P Reactant A,B,C,D,E
Xul5P Product A,B,C,D,E
rpi Rul5P Reactant A,B,C,D,E
Rib5P Product A,B,C,D,E
tk2 Xul5P Reactant A,B,C,D,E
Ery4P Reactant a,b,c,d
GAP Product C,D,E
Fru6P Product A,B,a,b,c,d
tk2_reversed GAP Reactant C,D,E
Fru6P Reactant A,B,a,b,c,d
Xul5P Product A,B,C,D,E
Ery4P Product a,b,c,d
tk1 Xul5P Reactant A,B,C,D,E
Rib5P Reactant a,b,c,d,e
Sed7P Product A,B,a,b,c,d,e
GAP Product C,D,E
tk1_reversed Sed7P Reactant A,B,a,b,c,d,e
GAP Reactant C,D,E
Xul5P Product A,B,C,D,E
Rib5P Product a,b,c,d,e
tal GAP Reactant A,B,C
Sed7P Reactant a,b,c,d,e,f,g
Ery4P Product d,e,f,g
Fru6P Product a,b,c,A,B,C
tal_reversed Ery4P Reactant d,e,f,g
Fru6P Reactant a,b,c,A,B,C
GAP Product A,B,C
Sed7P Product a,b,c,d,e,f,g
pdh Pyr Reactant A,B,C
AcCoA Product B,C
CO2 Product A
glta AcCoA Reactant A,B
OAA Reactant a,b,c,d
ICit Product d,c,b,a,B,A
icd ICit Reactant A,B,C,D,E,F
AKG Product A,B,C,E,F
CO2 Product D
akd AKG Reactant A,B,C,D,E
Suc Product B,C,D,E
CO2 Product A
fumA Suc Reactant A,B,C,D
Mal Product A,B,C,D
fumB Suc Reactant A,B,C,D
Mal Product D,C,B,A
fumC Mal Reactant A,B,C,D
Suc Product A,B,C,D
mdh Mal Reactant A,B,C,D
OAA Product A,B,C,D
mdh_reversed OAA Reactant A,B,C,D
Mal Product A,B,C,D
gs1 ICit Reactant A,B,C,D,E,F
GlyOx Product A,B
Suc Product D,C,E,F
gs2 GlyOx Reactant A,B
AcCoA Reactant a,b
Mal Product A,B,b,a
ppc PEP Reactant A,B,C
CO2 Reactant a
OAA Product A,B,C,a
mez Mal Reactant A,B,C,a
CO2 Product a
Pyr Product A,B,C
dr_glc6P Glc6P Reactant A,B,C,D,E,F
Tre Product A,B,C,D,E,F
dr_fru6P Fru6P Reactant A,B,C,D,E,F
GlcNAcAux Product A,B,C,D,E,F
dr_accoa AcCoA Reactant a,b
AcCoAaux Product a,b
dr_pyr1 Pyr Reactant a,b,c
Pyraux Product a,b,c
dr_akg AKG Reactant a,b,c,d,e
AKGaux Product a,b,c,d,e
dr_oaa1 OAA Reactant a,b,c,d
Thr Product a,b,c,d
dr_oaa2 Thr Reactant a,b,c,d
Gly Product a,b
COGly Product c,d
dr_oaa3 Thr Reactant a,b,c,d
Thraux Product a,b,c,d
dr_oaa4 COGly Reactant a,b
COGlyaux Product a,b
dr_rib5p Rib5P Reactant a,b,c,d,e
CO2 Reactant A
His Product e,d,c,b,a,A
dr_rib5p2aux His Reactant A,B,C,D,E,F
HisAUX Product A,B,C,D,E,F
dr_e4p Ery4P Reactant A,B,C,D
Ery4Paux Product A,B,C,D
dr_pep PEP Reactant A,B,C
PEPAUX Product A,B,C
dr_gap1 GAP Reactant A,B,C
Ser Product A,B,C
dr_gap2 Ser Reactant A,B,C
Cys Product A,B,C
dr_gap3 Ser Reactant A,B,C
Gly Product A,B
CO2 Product C
dr_gap3_aux Gly Reactant A,B
GlyAux Product A,B
dr_gap4 Gly Reactant A,B
CO2 Product A
CO2 Product B
bs_co2 CO2 Reactant A
BM_CO2 Product A

FLUXES NET

Reaction Name Constrained Flux Value
Glucupt 4
dr_glc6P 0.01107
dr_fru6P 0.00383
dr_pep 0.02803
dr_gap1 0.2357
dr_gap3_aux 0.03428

POOL_SIZE

Compound Name Value
AcCoA 0.09
AKG 1
GAP 1
Mal 0.03
PEP 0.08
Pyr 0.08
Suc 0.07

EQUALITIES

Coefficient reaction 1 Coefficient reaction 2 Value
1*fumA -1*fumB 0

INEQUALITIES

InEqualities
hxi>=0.0001
pyk>=0.0001
fumA>=0.0001
fumB>=0.0001
fumC>=0.0001
gdh>=0.0001
mez>=0.0001
icd>=0.0001
dr_gap3>=0.0001
akd>=0.0001
dr_accoa>=0.200
dr_akg>=0.116
dr_pyr1>=0.160
dr_pyr1<=0.170
dr_oaa1>=0.0964

LABEL_INPUT

Compound Isotopomer Value
Gluc 000000 0.6406
Gluc 000001 0.0099
Gluc 000010 0.00
Gluc 000100 0.0099
Gluc 001000 0.0099
Gluc 010000 0.0297
Gluc 100000 0.00
Gluc 111111 0.3

MASS_SPECTROMETRY

Compound Fragment Mass Value Standard deviation Time point
Glc6P 1,2,3,4,5,6 0 0.626911235378 0.01 1
Glc6P 1,2,3,4,5,6 1 0.065268087191 0.01 1
Glc6P 1,2,3,4,5,6 2 0.018538710189 0.01 1
Glc6P 1,2,3,4,5,6 3 0.017747213905 0.01 1
Glc6P 1,2,3,4,5,6 4 0.006838375742 0.01 1
Glc6P 1,2,3,4,5,6 5 0.002493395852 0.01 1
Glc6P 1,2,3,4,5,6 6 0.264111779615 0.01 1
Glc6P 2,3 0 0.662331260948 0.01 1
Glc6P 2,3 1 0.0685978496 0.01 1
Glc6P 2,3 2 0.270853413823 0.01 1
Ery4P 1,2,3,4 0 0.727200278547 0.01 1
Ery4P 1,2,3,4 1 0.077331500589 0.01 1
Ery4P 1,2,3,4 2 0.010532063122 0.01 1
Ery4P 1,2,3,4 3 0.045360699885 0.01 1
Ery4P 1,2,3,4 4 0.14104751075 0.01 1
PEP 1,2,3 0 0.720280182037 0.01 1
PEP 1,2,3 1 0.058422390294 0.01 1
PEP 1,2,3 2 0.041815540761 0.01 1
PEP 1,2,3 3 0.180995978631 0.01 1
Gly 1,2 0 0.897738657807 0.01 1
Gly 1,2 1 0.03618619141 0.01 1
Gly 1,2 2 0.066555522611 0.01 1
AKG 1,2,3,4 0 0.785587233107 0.01 1
AKG 1,2,3,4 1 0.126857798358 0.01 1
AKG 1,2,3,4 2 0.069375917679 0.01 1
AKG 1,2,3,4 3 0.017957934848 0.01 1
AKG 1,2,3,4 4 0.001419344009 0.01 1
Rib5P 1,2,3 0 0.710609354823 0.01 1
Rib5P 1,2,3 1 0.127401917206 0.01 1
Rib5P 1,2,3,4 0 0.704378050034 0.01 1
Rib5P 1,2,3,4 1 0.118660459869 0.01 1
Xul5P 1,2,3 0 0.582201154874 0.01 1
Xul5P 1,2,3 1 0.179079221558 0.01 1
Xul5P 1,2,3,4,5 0 0.543992597103 0.01 1
Xul5P 1,2,3,4,5 1 0.064021555497 0.01 1
Sed7P 1,2,3,4,5,6,7 0 0.51922269919 0.01 1
Sed7P 1,2,3,4,5,6,7 1 0.115991233869 0.01 1
Sed7P 1,2,3,4,5,6,7 2 0.129869175215 0.01 1
Sed7P 1,2,3,4,5,6,7 3 0.083556362077 0.01 1
Sed7P 1,2,3,4,5,6,7 4 0.061933800273 0.01 1
Sed7P 1,2,3,4,5,6,7 5 0.05565004936 0.01 1
Sed7P 1,2,3,4,5,6,7 6 0.014580916287 0.01 1
Sed7P 1,2,3,4,5,6,7 7 0.02215225576 0.01 1
Glc6P 1,2,3,4,5,6 0 0.607686468814 0.01 2
Glc6P 1,2,3,4,5,6 1 0.068383812449 0.01 2
Glc6P 1,2,3,4,5,6 2 0.022637259338 0.01 2
Glc6P 1,2,3,4,5,6 3 0.021716402868 0.01 2
Glc6P 1,2,3,4,5,6 4 0.010701129728 0.01 2
Glc6P 1,2,3,4,5,6 5 0.004672734521 0.01 2
Glc6P 1,2,3,4,5,6 6 0.266307037686 0.01 2
Glc6P 2,3 0 0.64554858775 0.01 2
Glc6P 2,3 1 0.08016734022 0.01 2
Glc6P 2,3 2 0.276190285438 0.01 2
Ery4P 1,2,3,4 0 0.624112977626 0.01 2
Ery4P 1,2,3,4 1 0.103475647659 0.01 2
Ery4P 1,2,3,4 2 0.021857362999 0.01 2
Ery4P 1,2,3,4 3 0.065221050556 0.01 2
Ery4P 1,2,3,4 4 0.187557680889 0.01 2
PEP 1,2,3 0 0.638451831082 0.01 2
PEP 1,2,3 1 0.081179881683 0.01 2
PEP 1,2,3 2 0.063794513636 0.01 2
PEP 1,2,3 3 0.218654033037 0.01 2
Gly 1,2 0 0.72735048661 0.01 2
Gly 1,2 1 0.097364170976 0.01 2
Gly 1,2 2 0.176822797566 0.01 2
AKG 1,2,3,4 0 0.521687991636 0.01 2
AKG 1,2,3,4 1 0.235790507259 0.01 2
AKG 1,2,3,4 2 0.161662669017 0.01 2
AKG 1,2,3,4 3 0.073228221381 0.01 2
AKG 1,2,3,4 4 0.011004052835 0.01 2
Rib5P 1,2,3 0 0.574137343906 0.01 2
Rib5P 1,2,3 1 0.187792017507 0.01 2
Rib5P 1,2,3,4 0 0.566195761027 0.01 2
Rib5P 1,2,3,4 1 0.165091278685 0.01 2
Xul5P 1,2,3 0 0.500735327908 0.01 2
Xul5P 1,2,3 1 0.20752988212 0.01 2
Xul5P 1,2,3,4,5 0 0.452961640027 0.01 2
Xul5P 1,2,3,4,5 1 0.075437046392 0.01 2
Sed7P 1,2,3,4,5,6,7 0 0.375949231805 0.01 2
Sed7P 1,2,3,4,5,6,7 1 0.137863841676 0.01 2
Sed7P 1,2,3,4,5,6,7 2 0.146400590498 0.01 2
Sed7P 1,2,3,4,5,6,7 3 0.108475096156 0.01 2
Sed7P 1,2,3,4,5,6,7 4 0.092664683959 0.01 2
Sed7P 1,2,3,4,5,6,7 5 0.076786256967 0.01 2
Sed7P 1,2,3,4,5,6,7 6 0.02962075483 0.01 2
Sed7P 1,2,3,4,5,6,7 7 0.036731185845 0.01 2
Glc6P 1,2,3,4,5,6 0 0.603207502849 0.01 3
Glc6P 1,2,3,4,5,6 1 0.069300110256 0.01 3
Glc6P 1,2,3,4,5,6 2 0.022679764469 0.01 3
Glc6P 1,2,3,4,5,6 3 0.022769984502 0.01 3
Glc6P 1,2,3,4,5,6 4 0.011972375684 0.01 3
Glc6P 1,2,3,4,5,6 5 0.005203011932 0.01 3
Glc6P 1,2,3,4,5,6 6 0.26702874729 0.01 3
Glc6P 2,3 0 0.641492408768 0.01 3
Glc6P 2,3 1 0.082488402282 0.01 3
Glc6P 2,3 2 0.277958570217 0.01 3
Ery4P 1,2,3,4 0 0.58789435864 0.01 3
Ery4P 1,2,3,4 1 0.114121114303 0.01 3
Ery4P 1,2,3,4 2 0.026184392248 0.01 3
Ery4P 1,2,3,4 3 0.071584808138 0.01 3
Ery4P 1,2,3,4 4 0.202730968943 0.01 3
PEP 1,2,3 0 0.616654131004 0.01 3
PEP 1,2,3 1 0.089191298521 0.01 3
PEP 1,2,3 2 0.066846651855 0.01 3
PEP 1,2,3 3 0.229554875323 0.01 3
Gly 1,2 0 0.654417645396 0.01 3
Gly 1,2 1 0.131146847888 0.01 3
Gly 1,2 2 0.216461589739 0.01 3
AKG 1,2,3,4 0 0.399441135237 0.01 3
AKG 1,2,3,4 1 0.279368358295 0.01 3
AKG 1,2,3,4 2 0.198750643438 0.01 3
AKG 1,2,3,4 3 0.106866375312 0.01 3
AKG 1,2,3,4 4 0.02010061399 0.01 3
Rib5P 1,2,3 0 0.528477078689 0.01 3
Rib5P 1,2,3 1 0.204417465961 0.01 3
Rib5P 1,2,3,4 0 0.433040499162 0.01 3
Rib5P 1,2,3,4 1 0.079436360373 0.01 3
Xul5P 1,2,3 0 0.481394979474 0.01 3
Xul5P 1,2,3 1 0.216816395729 0.01 3
Xul5P 1,2,3,4,5 0 0.433040499162 0.01 3
Xul5P 1,2,3,4,5 1 0.079436360373 0.01 3
Sed7P 1,2,3,4,5,6,7 0 0.336709701875 0.01 3
Sed7P 1,2,3,4,5,6,7 1 0.142919241255 0.01 3
Sed7P 1,2,3,4,5,6,7 2 0.1454557744 0.01 3
Sed7P 1,2,3,4,5,6,7 3 0.115299754463 0.01 3
Sed7P 1,2,3,4,5,6,7 4 0.104155198066 0.01 3
Sed7P 1,2,3,4,5,6,7 5 0.084373737748 0.01 3
Sed7P 1,2,3,4,5,6,7 6 0.034720078925 0.01 3
Sed7P 1,2,3,4,5,6,7 7 0.041397418876 0.01 3
Glc6P 1,2,3,4,5,6 0 0.601534019986 0.01 5
Glc6P 1,2,3,4,5,6 1 0.069771996362 0.01 5
Glc6P 1,2,3,4,5,6 2 0.022474915492 0.01 5
Glc6P 1,2,3,4,5,6 3 0.023194636644 0.01 5
Glc6P 1,2,3,4,5,6 4 0.012529197324 0.01 5
Glc6P 1,2,3,4,5,6 5 0.005362194086 0.01 5
Glc6P 1,2,3,4,5,6 6 0.267317674957 0.01 5
Glc6P 2,3 0 0.639974208207 0.01 5
Glc6P 2,3 1 0.08329789384 0.01 5
Glc6P 2,3 2 0.278680103731 0.01 5
Ery4P 1,2,3,4 0 0.571266383469 0.01 5
Ery4P 1,2,3,4 1 0.119766552165 0.01 5
Ery4P 1,2,3,4 2 0.028155463362 0.01 5
Ery4P 1,2,3,4 3 0.074165745831 0.01 5
Ery4P 1,2,3,4 4 0.209305627179 0.01 5
PEP 1,2,3 0 0.607824635975 0.01 5
PEP 1,2,3 1 0.093253444912 0.01 5
PEP 1,2,3 2 0.067150547092 0.01 5
PEP 1,2,3 3 0.234089387774 0.01 5
Gly 1,2 0 0.622778500412 0.01 5
Gly 1,2 1 0.145755346188 0.01 5
Gly 1,2 2 0.233720305611 0.01 5
AKG 1,2,3,4 0 0.337216614302 0.01 5
AKG 1,2,3,4 1 0.299512141915 0.01 5
AKG 1,2,3,4 2 0.215313159199 0.01 5
AKG 1,2,3,4 3 0.126218999585 0.01 5
AKG 1,2,3,4 4 0.026914437088 0.01 5
Rib5P 1,2,3 0 0.508334096443 0.01 5
Rib5P 1,2,3 1 0.210350872397 0.01 5
Rib5P 1,2,3,4 0 0.499460729533 0.01 5
Rib5P 1,2,3,4 1 0.181158217016 0.01 5
Xul5P 1,2,3 0 0.47422196031 0.01 5
Xul5P 1,2,3 1 0.221378031869 0.01 5
Xul5P 1,2,3,4,5 0 0.426255208251 0.01 5
Xul5P 1,2,3,4,5 1 0.081502793042 0.01 5
Sed7P 1,2,3,4,5,6,7 0 0.320874761896 0.01 5
Sed7P 1,2,3,4,5,6,7 1 0.144934600316 0.01 5
Sed7P 1,2,3,4,5,6,7 2 0.144297462188 0.01 5
Sed7P 1,2,3,4,5,6,7 3 0.117670335508 0.01 5
Sed7P 1,2,3,4,5,6,7 4 0.109486262735 0.01 5
Sed7P 1,2,3,4,5,6,7 5 0.087961171405 0.01 5
Sed7P 1,2,3,4,5,6,7 6 0.036724767288 0.01 5
Sed7P 1,2,3,4,5,6,7 7 0.04333302817 0.01 5
Glc6P 1,2,3,4,5,6 0 0.601349140169 0.01 8
Glc6P 1,2,3,4,5,6 1 0.069842557083 0.01 8
Glc6P 1,2,3,4,5,6 2 0.022435945782 0.01 8
Glc6P 1,2,3,4,5,6 3 0.023241849281 0.01 8
Glc6P 1,2,3,4,5,6 4 0.012595203146 0.01 8
Glc6P 1,2,3,4,5,6 5 0.005373953941 0.01 8
Glc6P 1,2,3,4,5,6 6 0.267348702493 0.01 8
Glc6P 2,3 0 0.639804645941 0.01 8
Glc6P 2,3 1 0.083386757238 0.01 8
Glc6P 2,3 2 0.278762251346 0.01 8
Ery4P 1,2,3,4 0 0.569206924481 0.01 8
Ery4P 1,2,3,4 1 0.120608462832 0.01 8
Ery4P 1,2,3,4 2 0.028386019999 0.01 8
Ery4P 1,2,3,4 3 0.074410559687 0.01 8
Ery4P 1,2,3,4 4 0.210067188374 0.01 8
PEP 1,2,3 0 0.606410160426 0.01 8
PEP 1,2,3 1 0.094024463222 0.01 8
PEP 1,2,3 2 0.067233462103 0.01 8
PEP 1,2,3 3 0.234662385476 0.01 8
Gly 1,2 0 0.616987500901 0.01 8
Gly 1,2 1 0.148420490642 0.01 8
Gly 1,2 2 0.236888025567 0.01 8
AKG 1,2,3,4 0 0.328071385249 0.01 8
AKG 1,2,3,4 1 0.302470894999 0.01 8
AKG 1,2,3,4 2 0.217246987172 0.01 8
AKG 1,2,3,4 3 0.129219377786 0.01 8
AKG 1,2,3,4 4 0.028272978416 0.01 8
Rib5P 1,2,3 0 0.505829941754 0.01 8
Rib5P 1,2,3 1 0.210988302385 0.01 8
Rib5P 1,2,3,4 0 0.497032127859 0.01 8
Rib5P 1,2,3,4 1 0.181564386891 0.01 8
Xul5P 1,2,3 0 0.473432281698 0.01 8
Xul5P 1,2,3 1 0.221985016035 0.01 8
Xul5P 1,2,3,4,5 0 0.425570974126 0.01 8
Xul5P 1,2,3,4,5 1 0.081806191901 0.01 8
Sed7P 1,2,3,4,5,6,7 0 0.3190410584 0.01 8
Sed7P 1,2,3,4,5,6,7 1 0.145237823438 0.01 8
Sed7P 1,2,3,4,5,6,7 2 0.144134897338 0.01 8
Sed7P 1,2,3,4,5,6,7 3 0.117898394576 0.01 8
Sed7P 1,2,3,4,5,6,7 4 0.110128242064 0.01 8
Sed7P 1,2,3,4,5,6,7 5 0.088395617944 0.01 8
Sed7P 1,2,3,4,5,6,7 6 0.036927628942 0.01 8
Sed7P 1,2,3,4,5,6,7 7 0.043551241597 0.01 8